Platform for optogenetics, patch-clamp and flash photolysis studies

Platform for optogenetics, patch-clamp and flash photolysis studies

About Facility

Setup for optogenetics and patch-clamp

The optogenetics is a novel approach for management of key biological processes on the level of cells, neural network and even animal. Optogenetics was awarded honorary title “Method of year” by the Nature magazine in 2010. In brief, method concept is the following. Photosensitive proteins are introduced to the cell by genetic engineering methods for neurons to be able to transmit electric pulses under illumination. As a result, real-time control of neurons activity could be reached due to simple lighting by a lamp of a certain wavelength.

System for optogenetic studies and a visualized patch-clamp installed in Laboratory for Advanced Research of Membrane Proteins, MIPT in the end of 2015 year. It is powerful, integrated system for different applications. It allows for photostimulation and photomodification (uncaging), optogenetic studies with simultaneous patch-clamp control of the cell potential, signal transmission through the neural network.

Research object (separated healthy cell) could be done by optical microscope SliceScope Pro 6000 (Scientifica, UK). Object visualization is available by means of visiable light (with additional image quality improvement via DIC, Dodt, oblique illumination contrasting methods) and digital camera (IDS, Olympus, Japan). Fluorescence detection is possible by usage of three dicroic filters (Olympus) and LED pE-100 (CoolLED, UK) illumination.

Precisely directed laser illumination of LASU system (Scientifica, UK) allows for aactivation of single ion channels in the cell. Fast accurate positioning of diode lasers (OBIS, Coherent Inc., USA) is carried out by galvo mirror scanhead. Plenty of spatially separated places could be illuminated in programmed manner (sequence, duration, time interval could be adjusted by LASU 10 software (Scientifica, UK)) for the serial activation of different cell surface regions.

Photostimulation causes change of cell membrane potential. Electrical response to the illumination is detected by electrophysiological module of the system. Digidata 1550A1 (Axon Instruments, Molecular Devices, USA) generates electrical pulses of different sequences guided by user’s configuration, serves as DAC/ADC, transmits control signal to the MultiClamp 700B (Axon Instruments, Molecular Devices, USA) and finally to the neuron. Then, cell electrical response, received by MultiClamp 700B, goes to Digidata 1550A1, which suppress noises and send signal to PC.

PatchStar micromanipulators (Scientifica, UK), synchronized with microscope motorized bottom plate, allow bring recording microelectrodes to neurons with photoactivated ion channels.

Setup for optogenetics and patch-clamp is used at MIPT for the search of novel photosensitive proteins, controlling transport of certain important ions. Such proteins will expand the arsenal of optogenetic tools and thereby facilitate scientific and pharmacological research in the field of neurodegenerative diseases.

List of key devices with representative features

Name Description
Visualization module Direct fluorescent microscope SliceScope Pro 6000 (Scientifica, UK) with Dodt contrast, fluorescence imaging. It is optimized for patch-clamp studies by motorized bottom plate, water immersion objective (Olympus, Japan).
Photostimulation module Laser Applied Stimulation and Uncaging (LASU) system (Scientifica, UK) with 488, 561nm diode lasers (OBIS, Coherent Inc., USA) with high speed, focused delivery of intense laser illumination to the sample with easy to use software for user selectable laser spot positioning. Additional wide-field light stimulation could be done by 471 and 565nm LEDs (pE-100, CoolLED, UK). System complemented with Perfusion setup, Slice Recording Chamber, Horizontal Micropipette Needle Puller (Sutter Instrument P-2000) for fine tip production on glass capillaries for microinjection and patch clamp microelectrodes.
Patch-clamp module
  • Electrical signals generation and processing by Digidata 1550A1 (Axon Instruments, Molecular Devices, USA).
  • Two motorised 4-axis super smooth manipulators PatchStar (Scientifica, UK) for capillary electrods delivery to the cells.
  • Recording of electrical response signals from cells by MultiClamp 700B.

Setup for optogenetics and patch-clamp

The Laser Flash Photolysis technique provides one of the most effective methods for studying by direct measurement the reactions of transient species such as radicals, excited states or ions, in chemical and biological systems generated by a short intense light pulse from a pulsed laser source (‘pump source’). The use of a laser for sample excitation gives the technique the specificity of single wavelength excitation and nanosecond time resolution. This intense light pulse creates short lived photo-excited intermediates - excited states. Absorption changes are recorded using a spectrally continuous Xenon lamp (‘probe source’) forming the background in a single beam absorption spectrometer.

Finding wide application in chemical research, Laser flash photolysis has been used increasingly in the area of bioinorganic reaction mechanisms, for example, studies on electron transport in cytochromes or ligand binding. More exotic applications involving the Laser Flash Photolysis technique have recently included studies on the conformational changes of functional proteins that occur during the course of their activity.

List of key devices with representative features

Light source for absorption measurements (probe sourse) – Xe lamp with monochromator.
Detection system – Hamamatsu photomultiplier tube with two oscilloscopes, operating as ADC in different timescales.
Pulsed light source (pump source) - Nd:YAG laser (pulse duration 6ns) with OPO (wavelengths range 420-680 nm, pulse energy 0-40mJ).
Sample environment – temperature controller (from -50C to 80C), absorption spectrophotometer.

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